Shows
The Metabolomist podcastThe Metabolomist - Haley ChatelaineEarly career scientist episode: Vitamins & metabolic syndrome
Haley Chatelaine s a post-doctoral fellow at the NIH’s National Center for Advancing Translational Sciences (NCATS, USA)
Favorite metabolite
Cytosine - but also Vitamin D
Paper we discussed in this episode
Paper on the absorption of fat soluble vitamins in patients with metabolic syndrome | Vitamin A and D Absorption in Adults with Metabolic Syndrome versus Healthy Controls: A Pilot Study Utilizing Targeted and Untargeted LC–MS Lipidomics
Learn more about MANA-ECM
Let Arpana Vaniya and Nicole Prince know you appreciate their effort to p...2023-10-031h 03
The Metabolomist podcastThe Metabolomist - Sapna SharmaMulti-omics & type 2 diabetes
Sapna Sharma is group leader at Technical University Munich (TUM) in Germany
Favorite metabolite
lysophosphatidylcholines (LPCs)
Papers we discussed in this episode
Effect of BMI on type 2 diabetes | Metabolic Signatures Elucidate the Effect of Body Mass Index on Type 2 Diabetes
More on the KORA cohort discussed in this episode and in the first paper.
Paper on medication associations with multiple omics | Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
More on the IMI-direct project
"There is enough data, but th...2023-09-0551 min
The Metabolomist podcastThe Metabolomist - Karel KaleckýBiobanks & neurodegenerative diseases
Karel Kalecký is postdoctoral research associate
at the Institute of Metabolic Disease, Baylor Scott & White Research Institute in Dallas, TX (USA)
Favorite metabolite
Betaine (trimethylglycine)
Papers we discussed in this episode
One-Carbon Metabolism in Alzheimer’s Disease and Parkinson’s Disease Brain Tissue
Targeted Metabolomic Analysis in Alzheimer's Disease Plasma and Brain Tissue in Non-Hispanic Whites
Sign up for The Metabolomist mailing list to be the first to hear about the latest episodes and news around metabolomics at https://themetabolomist.com
Finally available - Ali...2023-08-0154 min
The Metabolomist podcastThe Metabolomist - Gary PattiFlux metabolomics & cancer
Garry Patti is Professor of Chemistry and of Genetics and Medicine
at Washington University in St.Louis MO (USA)
Favorite metabolite
lactate
Paper we discussed in this episode
Isotope tracing in adult zebrafish reveals alanine cycling between melanoma and liver
"Cancer cells demonstrate a remarkable degree of metabolic plasticity."
Sign up for The Metabolomist mailing list to be the first to hear about the latest episodes and news around metabolomics at https://themetabolomist.com
Finally available - Alices first book
The...2023-07-0445 min
The Metabolomist podcastThe Metabolomist - Rachel KellyEpidemiology & asthma
Rachel Kelly is associate professor
at the Brigham and Women's Hospital in Boston MA (USA)
Favorite metabolite
sphingosine-1-phosphate
Papers we discussed in this episode
Metabo-Endotypes of Asthma Reveal Differences in Lung Function: Discovery and Validation in Two TOPMed Cohorts
Phenotypically driven subgroups of ASD display distinct metabolomic profiles
Activities in consortia
EnviroGenomarkers
COMETS – The consortium of metabolomics studies
COMETS analytics
On similarity network fusion
"Metabolomics is its own beast. You can’t treat it in the...2023-06-0648 min
TheSugarScience Podcast- curating the scientific conversation in type 1 diabetesEpisode 187: Stefan Ledinger, Director, BiocratesIn this episode, Stefan Ledinger joins us to discuss T1D as a complex metabolic disease: metabolomics as a tool to explore pathophysiology and enable personalized medicine.
Ask the Expert is a ~30 minute digital cafe experience where scientists and grad students can meet and exchange with thought leaders in the field of type 1 diabetes. Link below to sign up for a seat in the cafe!
2023-05-1644 min
The Metabolomist podcastThe Metabolomist - Jennifer KirwanTranslating metabolomics to the clinics & quality control
Jennifer Kirwan is Head of the Metabolomics Platform
at the Berlin Institute of Health at Charité (Germany)
Favorite metabolite
Melatonin, a close relative of tryptophan, Jennifer Kirwan’s favorite metabolite at MetSoc last year and the metabolite chosen by our previous guest David Wishart!
Papers we discussed in this episode
Translating metabolomics into clinical practice
Don’t forget to send your constructive criticism on this opinion piece in a comment via LinkedIn
Identification and validation of small molecule analytes in mouse plasma by li...2023-05-0252 min
The Metabolomist podcastThe Metabolomist - David WishartDatabases & the place of metabolomics in the clinics
Dr. David Wishart
Professor, Faculty of Science - Biological Sciences, University of Alberta, Canada
Wishart group @UAlberta
Favorite metabolite
tryptophan
Papers we discussed in this episode
Emerging applications of metabolomics in drug discovery and precision medicine
Towards a Rosetta stone for metabolomics: recommendations to overcome inconsistent metabolite nomenclature
David Wishart’s talk at the event on Pan-cohort studies in October 2022
“Why targeted metabolomics is essential for population health”
Sign up for The Metabolomist mailin...2023-04-1842 min
The Metabolomist podcastThe Metabolomist - Robert AhrendsLipid quantification & data visualization
Dr. Robert Ahrends
PI Lipidomics at the Institut für Analytical Chemistry, University Vienna, Austria
Ahrends group @UniVie
Favorite lipid
lyso-sphingomyelin
Discussed paper by Peng et. al.
Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome
Lipidomics pioneers mentioned in the interview
Shorthand nomenclature developed by Gerhard Liebisch
With the corresponding text from the interview
There was great work done on lipids in the 1980’s and 1990’s already. People like Britta Brüger, Andrej...2022-10-0444 min
The Metabolomist podcastThe Metabolomist - Hannelore DanielNutrition & microbiome
Prof. emer. Hannelore Daniel
Department of Nutrition and Food Sciences
Hannelore Daniel @TUM (German)
Favorite metabolite
lanthionine
Discussed paper by Krug et. al.
The dynamic range of the human metabolome revealed by challenges
Cited paper on sugar metabolomics by Mack et. al.
Exploring the Diversity of Sugar Compounds in Healthy, Prediabetic, and Diabetic Volunteers
Other resources
Talk on Gut Microbiome: Myths and Metabolites by Prof. Hannelore Daniel
(given at the 8th Munich Metabolomics Symposium - November 2021)
...2022-09-0657 min
The Metabolomist podcastThe Metabolomist - Karsten SuhremGWAS & metabolite ratios
Professor of Physiology and Biophysics
Director of Bioinformatics Core at Weill Cornell Medicine-Qatar
Suhre Lab @ Weill CornellVirtual metabolomics core facility
Discussed paper by Gieger et. al.Genetics Meets Metabolomics: A Genome-Wide Association Study of Metabolite Profiles in Human Serum
Karstens blog about metabolomics, genomics, and where the two fields meethttp://www.metabolomix.com/
mGWAS server (collaboration project) http://metabolomics.gwas.eu
Other resources discussed in the podcast in github
Sign-up for The Metabolomist e-mail list2022-08-0254 min
The Metabolomist podcastThe Metabolomist - Metabolomics2022 FeatureFavorite metabolites of Metabolomist listeners
Across these recordings, you will hear about the polar metabolites and the lipids that make the hearts of fourteen Metabolomists beat for their research.
In this special episode, we learn more about pyruvate, gamma-hydroxybutyric acid (GHB), glutathione, branched-chain alpha keto acids (BCKAs), tryptophan, glutamine, glutamate, nicotinamide adenine dinucleotide (NAD), nonanal, strychnine, daptomycin, but also free fatty acids, oxylipins, sphingolipids, and acylcarnitines.
A big thank you to all the contributors!
Make sure to let them know that you share their passion for their favorite metabolite by connecting with them with the links below.2022-07-0533 min
Mentes CovalentesBebidas energéticas: ¿dan alas? #48En el episodio de hoy Hugo y Clara hablan de las bebidas energéticas: historia, composición y efectos ¿De verdad dan alas? ¿Son peligrosas para la salud? Notas:Redes sociales:Puedes seguirnos en Twitter, Instagram y Facebook para estar al tanto de cualquier novedad.Si quieres aprender más sobre Neurociencia, puedes seguir a Clara en su canal de YouTube “Cerebrotes”, donde sube vídeos semanales hablando de Neurociencia y Psicología. También la puedes encontrar en Twitter, Instagram y Facebook con el nombre artístico de Cerebrotes. A Hugo sólo pue...2022-06-161h 02
The Metabolomist podcastThe Metabolomist - Julie CourraudStudy design & metabolomics in the clinics
Julie Courraud
Researcher in clinical metabolomics, National and Kapodistrian University of Athens, Greece
Current affiliation TrAMS group Athens
Previous affiliation Statens Serum Institute Copenhagen
Discussed paper by Courraud et. al.
Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
More about The Metabolomist podcast2022-06-0759 min
The Metabolomist podcastThe Metabolomist - What it is aboutWelcome to this new podcast
Dr. Alice Limonciel
Senior Scientist | Data Interpretation at biocrates life sciences ag.
Favorite metabolite
Asymmetric dimethylarginine (ADMA)
Connecting ideas to improve our understanding of biology; that’s what data interpretation is about. In the episodes of this podcast I host, I put each metabolomist’s story in the spotlight to expand our metabolomics interpretation toolbox.
My background is in molecular toxicology, with a strong focus on omics analysis and integration. Today, I use these skills to tell the stories that twinkle in the depths of meta...2022-05-0303 min
The Metabolomist podcastThe Metabolomist - Jan KrumsiekSex differences in metabolomics & AI-based networks
Jan Krumsiek
Assistant professor at the Institute for Computational Biomedicine,
Weill Cornell Medicine, New York
Krumsiek lab @Cornell
Favorite metabolite
2-Hydroxyglutarate
Discussed paper by Krumsiek et. al.
Gender-specific pathway differences in the human serum metabolome
Getting started with Gaussian graphical models (GGMs)
MoDentify R package
Modular metabolomics pipeline
maplet R toolbox
Open access multi-omic tools discussed (from other groups)
Multi-omics factor analysis (MOFA)
OmicsAnalyst
Other resources
Krumsiek lab github repository
More...2022-05-0346 min
The Metabolomist podcastThe Metabolomist - Gabi KastenmüllerData sharing & stratification in metabolomics
Dr. Gabi Kastenmüller
Group leader Metabolomics at the Institute of Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München, Germany (since 2011)
Kastenmueller group @Helmholtz
Favorite metabolite
b-citryl-L-glutamate
Discussed paper by Arnold et. al.
Sex and APOE ε4 genotype modify the Alzheimer’s disease serum metabolome
Database links discussed
AD Atlas
Omicscience
Snipa
GWAS Server
Other resources
Talk about the Omicscience platform by Prof. Claudia Langenberg
(given at the biocrates Pan-Cohort Metabolomics event 2021)
2022-04-2043 min